Selected Publications | Journal Papers | Peer-reviewed Conference Proceedings | Patents | Selected Invited Talks
Selected Publications
- D. Hanania, D. Bar-Lev, Y. Nogin, Y. Shechtman, E. Yaakobi, On the Capacity of DNA Labeling, IEEE Trans. Inform. Theory, Vol. 71, No. 5, MAY 2025.
- D. Bar-Lev, I. Orr, O. Sabary, T. Etzion, E. Yaakobi, Scalable and robust DNA-based storage via coding theory and deep learning. Nat Mach Intell 7, 639–649 (2025).
- D. Bar-Lev, O. Sabary, R. Gabrys, E. Yaakobi, Cover Your Bases: How to Minimize the Sequencing Coverage in DNA Storage Systems, 2023 IEEE International Symposium on Information Theory (ISIT), Taipei, Taiwan, 2023, pp. 370-375.
- Ben Shabat D, Hadad A, Boruchovsky A, Yaakobi E. GradHC: highly reliable gradual hash-based clustering for DNA storage systems. Bioinformatics. 2024 May
Journal Papers
- T. Etzion, E. Yaakobi, Error-Correction of Multidimensional Bursts, IEEE Trans. Inform. Theory, 55 (2009), 961–976.
- A. Jiang, R. Mateescu, E. Yaakobi, J. Bruck, P.H. Siegel, A. Vardy, J.K. Wolf, Storage Coding for Wear Leveling in Flash Memories, IEEE Trans. Inform. Theory, 56 (2010), 5290–5299.
- E. Yaakobi, P.H. Siegel, A. Vardy, J.K. Wolf, Multiple Error-Correcting WOM-Codes, IEEE Trans. Inform. Theory, 58 (2012), 2220–2230.
- E. Yaakobi, S.Kayser, P.H. Siegel, A. Vardy, J.K. Wolf, Codes for Write-Once Memories, IEEE Trans. Inform. Theory, 58 (2012), 2220–2230.
- R. Gabrys, E. Yaakobi, L. Dolecek, Graded Bit-Error-Correcting Codes with Applications to Flash Memory, IEEE Trans. Inform. Theory, 59 (2013), 2315–2327.
- M. Qin, E. Yaakobi, P.H. Siegel, Time-Space Constrained Codes for Phase-Change Memories, IEEE Trans. Inform. Theory, 59 (2013), 5102–5114.
- T. Etzion, A. Vardy, E. Yaakobi, Coding for the Lee and Manhattan Metrics with Weighing Matrices, IEEE Trans. Inform. Theory, 59 (2013), 6712–6723.
- E. Yaakobi, H. Mahdavifar, P.H. Siegel, A. Vardy, J.K. Wolf, Rewriting Codes for Flash Memories, IEEE Trans. Inform. Theory, 60 (2014), 964–975.
- M. Qin, E. Yaakobi, P.H. Siegel, Optimized Cell Programming for Flash Memories with Quantizers, IEEE Trans. Inform. Theory, 60 (2014), 2780–2795.
- M. Qin, E. Yaakobi, P.H. Siegel, Constrained Codes that Mitigate Inter-cell Interference in Read/Write Cycles for Flash Memories, IEEE J. on Selected Areas in Comm., 32 (2014), 836–846.
- Y. Cassuto, E. Yaakobi, Short Q-ary Fixed-Rate WOM Codes for Guaranteed Re-writes and with Hot/Cold Write Differentiation, IEEE Trans. Inform. Theory, 60 (2014), 3942–3958.
- Y. Levi, J. Bruck, Y. Cassuto, E.G. Friedman, A. Kolodny, E. Yaakobi, S. Kvatinsky, Logic Operations in Memory Using a Memristive Akers Array, Microelectronics Journal (in press), (2014).
- E. Yaakobi, A. Shpilka, High Sum-Rate Three-Write and Non-Binary WOM Codes, IEEE Trans. Inform. Theory, 60 (2014), 7006–7015.
- R. Gabrys, E. Yaakobi, L. Dolecek, Correcting Grain-Errors in Magnetic Media, IEEE Trans. Inform. Theory, 61 (2015), 2256–2272.
- A. Fazeli, A. Vardy, E. Yaakobi, Generalized Sphere Packing Bound, IEEE Trans. Inform. Theory, 61 (2015), 2313–2334.
- E. En Gad, E. Yaakobi, A. Jiang, J. Bruck, Rank-Modulation Rewriting Codes for Flash Memories, IEEE Trans. Inform. Theory, 61 (2015), 4209–4226.
- F. Farnoud, E. Yaakobi, J. Bruck, Approximate Sorting of Data Streams with Limited Storage, Journal of Combinatorial Optimization, (2015), 1–32.
- R. Gabrys, E. Yaakobi, F. Farnoud, F. Sala, J. Bruck, and L. Dolecek, Codes Correcting Erasures and Deletions for Rank Modulation, IEEE Trans. Inform. Theory, 62 (2016), 136–150.
- A. Wachter-Zeh, E. Yaakobi, Codes for Partially Stuck-at Memory Cells, IEEE Trans. Inform. Theory, 62 (2016), 639–654.
- S. Buzaglo, E. Yaakobi, On the Capacity of Constrained Permutation Codes for Rank Modulation, IEEE Trans. Inform. Theory, 62 (2016), 1649–1666.
- E. Yaakobi, J. Bruck, P.H. Siegel, Constructions and Decoding of Cyclic Codes over $b$-Symbol Read Channels, IEEE Trans. Inform. Theory, 62 (2016), 1541–1551.
- M. Blaum, J. Plank, M. Schwartz, E. Yaakobi, Construction of Partial MDS (PMDS) and Sector-Disk (SD) Codes with Two Global Parity Symbols, 62 (2016) IEEE Trans. Inform. Theory, 2673–2681.
- E. Yaakobi, R. Motwani, Construction of Random Input-Output Codes with Moderate Block Lengths, IEEE Trans. Communications, 64 (2016), 1819–1828.
- S. Buzaglo, E. Yaakobi, T. Etzion, J. Bruck, Systematic Error-Correcting Codes for Permutations and Multi-Permutations, IEEE Trans. Inform. Theory, 62 (2016), 3113–3124.
- Y. Cassuto, S. Kvatinsky, E. Yaakobi , Information-Theoretic Sneak-Path Mitigation in Memristor Crossbar Arrays, IEEE Trans. Inform. Theory, 62 (2016), 4801–4813.
- P. Huang, E. Yaakobi , H. Uchikawa, P.H. Siegel, Binary Linear Locally Repairable Codes, IEEE Trans. Inform. Theory, 62 (2016), 6268–6283.
- P. Huang, P.H. Siegel, E. Yaakobi , Performance of Multilevel Flash Memories with Different Binary Labelings: A Multi-User Perspective, IEEE J. on Selected Areas in Comm., 34 (2016), 2336–2353.
- C. Schoeny, A. Wachter-Zeh, R. Gabrys, E. Yaakobi , Codes Correcting a Burst of Deletions or Insertions, IEEE Trans. Inform. Theory, 63 (2017) 1971–1985.
- M. Horovitz, E. Yaakobi , On the Capacity of Write-Once Memories, to appear IEEE Trans. Inform. Theory, 63 (2017) 5124–5137.
- N. Raviv, E. Yaakobi, M. Médard, Coding for Locality in Reconstructing Permutations, Designs, Codes and Cryptography (2017), 1--32.
- M. Langberg, M. Schwartz, and E. Yaakobi, Coding for the l∞-Limited Permutation Channel, IEEE Trans. Inform. Theory, 63 (2017), 7676–7686.
- S. Buzaglo, Y. Cassuto, P.H. Siegel, and E. Yaakobi, Consecutive Switch Codes, IEEE Trans. Inform. Theory, 64 (2018), 2485–2498.
- R. Gabrys, E. Yaakobi, and O. Milenkovic, Codes in the Damerau Distance for DNA Storage, IEEE Trans. Inform. Theory, 64 (2018), 2550–2570.
- J. Aspnes, K. Censor-Hillel, E. Yaakobi, Concurrent Use of Write-Once Memory, Journal of Parallel and Distributed Computing, 113 (2018), 250–260.
- G. Yadgar, E. Yaakobi, F. Margaglia, Y. Li, A. Yucovich, N. Bundak, L. Gilon, N. Yakovi, A. Schuster, and A. Brinkmann, An Analysis of Flash Page Reuse with WOM Codes, IEEE Trans. Storage, 14 (2018), 10:1–10:39.
- R. Gabrys and E. Yaakobi, Sequence Reconstruction over the Deletion Channel, IEEE Trans. Inform. Theory, 64 (2018), 2924–2931.
- Y.-M. Chee, H.-M. Kiah, A. Vardy, V.-K. Vu, and E. Yaakobi, Coding for Racetrack Memories, IEEE Trans. Inform. Theory, 64 (2018), 7094–7112.
- H. Zhang, E. Yaakobi, and N. Silberstein, Multiset Combinatorial Batch Codes, Designs, Codes and Cryptography (2018), 1–16.
- N. Raviv, M. Schwartz, and E. Yaakobi, Rank Modulation Codes for DNA Storage, IEEE Trans. Inform. Theory, 65 (2019), 50–64.
- A. Lenz, A. Wachter-Zeh, and E. Yaakobi, Duplication-Correcting Codes, Designs, Codes and Cryptography, 87 (2019), 277–298.
- H. Asi and E. Yaakobi, Nearly Optimal Constructions of PIR and Batch Codes, IEEE Trans. Inform. Theory, 65 (2019), 947–964.
- M. Horovitz and E. Yaakobi, Reconstruction of Sequences over Non-Identical Channels, IEEE Trans. Inform. Theory, 65 (2019), 1267–1286.
- M. Levy and E. Yaakobi, Mutually Uncorrelated Codes for DNA Storage, IEEE Trans. Inform. Theory, 65 (2019), 3671–3691.
- E. Yaakobi and J. Bruck, On the Uncertainty of Information Retrieval in Associative Memories, IEEE Trans. Inform. Theory, 65 (2019), 2155–2165.
- R. Gabrys, E. Yaakobi, M. Blaum, and P.H. Siegel, Constructions of Partial MDS Codes over Small Fields, IEEE Trans. Inform. Theory, 65 (2019), 3692–3701.
- L. Yohananov and E. Yaakobi, Codes for Graph Erasures, IEEE Trans. Inform. Theory. 65 (2019), 5433– 5453.
- O. Elishco, R. Gabrys, and E. Yaakobi, Bounds and Constructions of Codes over Symbol-Pair Read Channels, IEEE Trans. Inform. Theory. 66 (2020), 1385–1395.
- Y.-M. Chee, H.-M. Kiah, A. Vardy, and E. Yaakobi, Explicit and Efficient WOM Codes of Finite-Length, 66 (2020), 2669–2682.
- A. Lenz, P.H. Siegel, A. Wachter-Zeh, and E. Yaakobi, Coding over Sets for DNA Storage, 66 (2020), 2331–2351.
- N. Raviv, I. Tamo, and E. Yaakobi, Private Information Retrieval in Graph Based Replication Systems, 66 (2020), 3590–3602.
- P. Huang, E. Yaakobi, and P.H. Siegel, Multi-Erasure Locally Recoverable Codes over Small Fields: Algebraic and Probabilistic Views, 66 (2020), 2609–2624.
- L. Yohananov, Y. Efron, and E. Yaakobi, Double and Triple Node-Erasure-Correcting Codes over Graphs, 66 (2020), 4089–4103.
- Y. Zhang, E. Yaakobi, and T. Etzion, Bounds on the Length of Functional PIR and Batch codes, 66 (2020), 4917–4934.
- A. Lenz, C. Rashtchian, P.H. Siegel, and E. Yaakobi, Covering Codes for Insertions and Deletions, IEEE Trans. Inform. Theory, 67 (2021), 3376–3388.
- L. Yohananov and E. Yaakobi, Codes over Trees, IEEE Trans. Inform. Theory, 67 (2021), 3599–3622.
- O. Sabary, Y. Orlev, R. Shafir, L. Anavy, E. Yaakobi, and Z. Yakhini, SOLQC: Synthetic Oligo Library Quality Control Tool, Bioinformatics, 37 (2021) 720–722.
- S. Kurz and E. Yaakobi, PIR Codes with Short Block Length, Designs, Codes and Cryptography, 89 (2021), 559–587.
- S. Marcovich and E. Yaakobi, Reconstruction of Strings from their Substrings Spectrum, IEEE Trans. Inform. Theory, 67 (2021), 4369–4384.
- O. Elishco, R. Gabrys, E. Yaakobi, and M. Medardi, Repeat-Free Codes, IEEE Trans. Inform. Theory, 67 (2021), 5749–5764.
- J. Chrisnata, H.-M. Kiah, S. Rao, A. Vardy, E. Yaakobi, and H. Yao, On the Number of Distinct k-Decks: Enumeration and Bounds, SIAM Journal on Discrete Mathematics, 2021.
- L. Holzbaur, S. Puchinger, E. Yaakobi, and A. Wachter-Zeh, Partial MDS Codes with Local Regeneration, IEEE Trans. Inform. Theory, 67 (2021), 6425–6441.
- M. Abu Sini and E. Yaakobi, On Levenshtein's Reconstruction Problem under Insertions, Deletions, and Substitutions, IEEE Trans. Inform. Theory, 67 (2021), 7132–7158.
- Y. Zhang, E. Yaakobi, and T. Etzion, Private Proximity Retrieval Codes, IEEE Trans. Inform. Theory, 67 (2021), 7458–7476.
- Y.-M. Chee, T. Etzion, H.-M. Kiah, S. Marcovich, V.-K. Vu, A. Vardy, and E. Yaakobi, Constrained de Bruijn Codes: Properties, Enumeration, Constructions, and Applications, IEEE Trans. Inform. Theory, 67 (2021), 7857–7875.
- R. Bitar, I. Smagloy, L. Welter, A. Wachter-Zeh, and E. Yaakobi, Criss-Cross Insertion and Deletion Correcting Codes, IEEE Trans. Inform. Theory, 67 (2021), 7999–8015.
- L. Holzbaur, R. Polyanskaya, N. Polyanskii, I. Vorobyev, and E. Yaakobi, Lifted Reed-Solomon Codes and Lifted Multiplicity Codes, IEEE Trans. Inform. Theory, 67 (2021), 8051–8069.
- H.-Y. Lin, S. Kumar, E. Rosnes, A. Graell i Amat, and E. Yaakobi, The Capacity of Single-Server Weakly-Private Information Retrieval, IEEE Journal on Selected Areas in Inform. Theory, 2 (2021), 415–427.
- K. Cai, H.-M. Kiah, T.-T. Nguyen, and E. Yaakobi, Coding for Sequence Reconstruction for Single Edits, IEEE Trans. Inform. Theory, 68 (2022), 66–79.
- M. Horovitz, E. Yaakobi, E. En Gad, and J. Bruck, Iterative Programming of Noisy Memory Cells, IEEE Trans. Comm., 70 (2022), 769–782.
- M. Nassar and E. Yaakobi, Array Codes for Functional PIR and Batch Codes, IEEE Trans. Inform. Theory, 68 (2022), 839–862.
- H.-Y. Lin, S. Kumar, E. Rosnes, A. Graell i Amat, and E. Yaakobi, Multi-Server Weakly-Private Information Retrieval, IEEE Trans. Inform. Theory, 68 (2022), 1197–1219.
- T. Shinkar, E. Yaakobi, A. Lenz, and A. Wachter-Zeh, Clustering-Correcting Codes, IEEE Trans. Inform. Theory, 68 (2022), 1560–1580.
- Y.-M. Chee, M. Horovitz, V.-K. Vu, E. Yaakobi, and A. Vardy, Endurance-Limited Memories: Capacity and Codes, IEEE Trans. Inform. Theory, 68 (2022), 1599--1613.
- R. Bitar, I. Smagloy, L. Welter, A. Wachter-Zeh, and E. Yaakobi, Multiple Criss-Cross Insertion and Deletion Correcting Codes, IEEE Trans. Inform. Theory, 68 (2022), 3767–3779.
- J. Chrisnata, H.-M. Kiah, and E. Yaakobi, Correcting Deletions with Multiple Reads, IEEE Trans. Inform. Theory, 68 (2022), 7141–7158.
- L. Yohananov and E. Yaakobi, Almost Optimal Construction of Functional Batch Codes Using Hadamard Codes, IEEE Trans. Inform. Theory, 68 (2022), 6434–6451.
- D. Bar-Lev, T. Etzion, and E. Yaakobi, On the Size of Balls and Anticodes of Small Diameter under the Fixed-Length Levenshtein Metric, 69 (2023), 2324–2340.
- S. Marcovich, T. Etzion, and E. Yaakobi, On Hierarchies of Balanced Sequences, IEEE Trans. Inform. Theory, 69 (2023), 2923–2939.
- A. Lenz, P.H. Siegel, A. Wachter-Zeh, and E. Yaakobi, The Noisy Drawing Channel: Reliable Data Storage in DNA Sequences, IEEE Trans. Inform. Theory, 69 (2023), 2757–2778.
- A. Lenz, R. Bitar, A. Wachter-Zeh, and E. Yaakobi, Function-Correcting Codes, IEEE Trans. Inform. Theory, 69 (2023), 5604–5618.
- Y. Yehezkeally, D. Bar-Lev, S. Marcovich, and E. Yaakobi, Generalized Unique Reconstruction from Substrings, IEEE Trans. Inform. Theory, 69 (2023), 5648–5659.
- S. Marcovich and E. Yaakobi, The Zero Cubes Free and Cubes Unique Multidimensional Constraints, IEEE Trans. Inform. Theory, 69 (2023), 6358–6375.
- Y. Yehezkeally, D. Bar-Lev, S. Marcovich, and E. Yaakobi, Adversarial Torn-paper Codes, IEEE Trans. Inform. Theory, 69 (2023), 6414–6427.
- A. Vardy and E. Yaakobi, Private Information Retrieval without Storage Overhead: Coding Instead of Replication, IEEE Journal on Selected Areas in Inform. Theory, 4 (2023), 286–301.
- J. Chrisnata, H.-M. Kiah, A. Vardy, and E. Yaakobi, Bee Identification Problem for DNA Strands, IEEE Journal on Selected Areas in Inform. Theory, 4 (2023), 190–204.
- A. Banerjee, A. Wachter-Zeh, and E. Yaakobi, Insertion and Deletion Correction in Polymer-based Data Storage, 69 (2023), 4384–4406.
- I. Smagloy, L.Welter, A.Wachter-Zeh, and E. Yaakobi, Single-Deletion Single-Substitution Correcting Codes, IEEE Trans. Inform. Theory, 69 (2023), 7659–7671.
- Y. Nogin, D. Bar-Lev, D. Hanania, T. Detinis Zur, Y. Ebenstein, E. Yaakobi, N. Weinberger, and Y. Shechtman, Design of Optimal Labeling Patterns for Optical Genome Mapping via Information Theory, Bioinformatics, 39-10 (2023).
- M. Abu-Sini and E. Yaakobi, On the Intersection of Multiple Insertion (or Deletion) Balls and its Application to List Decoding under the Reconstruction Model, IEEE Trans. Inform. Theory, 70 (2024), 3262–3297.
- R. Shafir, O. Sabary, L. Anavy, E. Yaakobi, and Z. Yakhini, Sequence Reconstruction Under Stutter Noise in Enzymatic DNA Synthesis, IEEE Trans. Comm. 72 (2024), 675–691.
- Y.-M. Chee, A. Vardy, V.-K. Vu, and E. Yaakobi, Transverse-Read-Codes for Domain Wall Memories, IEEE Journal on Selected Areas in Inform. Theory, 4 (2023), 784–793.
- O. Sabary, A. Yucovich, G. Shapira, and E. Yaakobi, Reconstruction Algorithms for DNA-Storage Systems, Scientific Reports, 14-1951 (2024).
- A. Banerjee, Y. Yehezkeally, A. Wachter-Zeh, and E. Yaakobi, Error-Correcting Codes for Nanopore Sequencing, IEEE Trans. Inform. Theory, 7 (2024), 4956–4967.
- D. Ben Shabat, A. Hadad, A. Boruchovsky, and E. Yaakobi, GradHC: Highly Reliable Gradual hash-based Clustering for DNA Storage Systems, Bioinformatics, 40-5, (2024).
- A. Barg, O. Elishco, R. Gabrys, G. Wang, and E. Yaakobi, Storage Codes and Recoverable Systems on Lines and Grids, Designs, Codes and Cryptography, (2024), 4145–4168.
- B. Moav, R. Gabrys, and E. Yaakobi, Tail-Erasure-Correcting Codes, IEEE Trans. Inform. Theory, 12 (2024), 8595–8613.
- D. Bar-Lev, O. Sabary, R. Gabrys, and E. Yaakobi, Cover Your Bases: How to Minimize the Sequencing Coverage in DNA Storage Systems, IEEE Trans. Inform. Theory, 1 (2025), 192–218.
- D. Bar-Lev, I. Orr. O. Sabary, T. Etzion, and E. Yaakobi, DNAformer allows Scalable and Robust DNA-based Storage via Coding Theory and Deep Learning, Nature Machine Intelligence, 7 (2025) 639–649.
- R. Con, D. Fathollahi, R. Gabrys, M. Wootters, and E. Yaakobi, Robust Gray Codes Approaching the Optimal Rate, IEEE Trans. Inform. Theory, 3 (2025), 1647–1665.
- R. Con, R. Gabrys, and E. Yaakobi, One Code Fits All: Strong stuck-at codes for versatile memory encoding, IEEE Trans. Inform. Theory, 3 (2025), 1666–1675.
- M. Abu-Sini, A. Lenz, and E. Yaakobi, On DNA Synthesis Using Shortmers and the Capacity of Nondeterministic Costly Constrained Graphs, IEEE Trans. Inform. Theory, 4 (2025), 2397–2442.
- C. Hofmeister, L. Masny, E. Yaakobi, and R. Bitar, Byzantine-Resilient Gradient Coding through Local Gradient Computations, IEEE Trans. Inform. Theory, 4 (2025), 3142–3156.
- D. Hanania, D. Bar-Lev, Y. Nogin, Y. Shechtman, and E. Yaakobi, On the Capacity of DNA Labeling, IEEE Trans. Inform. Theory, 5 (2025), 3457–3472.
- S. Kruglik, H.-M. Kiah, S.-H. Dau, and E. Yaakobi, Recovering Reed-Solomon Codes Privately, IEEE Trans. Inform. Forensics and Security, 20 (2025), 2807–2821.
- Z. Ye, O. Sabary, R. Gabrys, E. Yaakobi, and O. Elishco, More on codes for combinatorial composite DNA, Designs, Codes and Cryptography, 93 (2025), 3437–3462.
- Y.-M. Chee, T. Etzion, K.A.S. Immink, T.-T. Nguyen, V.-K. Vu, J.H. Weber, and E. Yaakobi, Thermal-Aware Communication, IEEE Trans. Inform. Theory, 6 (2025), 4145–4155.
- A. Boruchovsky, D. Bar-Lev, and E. Yaakobi, DNA-Correcting Codes: End-to-end Correction in DNA Storage Systems, IEEE Trans. Inform. Theory, 6 (2025), 4214–4227.
- G. Chaykin, O. Sabary, N. Furman, D. Ben Shabat, and E. Yaakobi, DNA-Storalator: a computational simulator for DNA storage, BMC Bioinformatics 26, 204 (2025).
- A. Singhvi, O. Sabary, D. Bar-Lev, and E. Yaakobi, Conditional Entropies of k-Deletion/Insertion Channels, IEEE Trans. Inform. Theory, 9 (2025), 6503–6516.
- A. Gruica, D. Bar-Lev, A. Ravagnani, and E. Yaakobi A Combinatorial Perspective on Random Access Efficiency for DNA Storage, IEEE Trans. Inform. Theory, 12 (2025), 9395-9412.
- T. Cohen and E. Yaakobi, Optimizing the Decoding Probability and Coverage Ratio of Composite DNA, IEEE Trans. Inform. Theory, 6 (2025), 417-431.
- C. Hofmeister, A. Gruica, D. Hanania, R. Bitar, and E. Yaakobi, Achieving DNA Labeling Capacity with Minimum Labels through Extremal de Bruijn Subgraphs, IEEE Trans. Inform. Theory, 2 (2026), 1122-1132.
- O. Sabary, I. Preuss, R. Gabrys, Z. Yakhini, L. Anavy, and E. Yaakobi, Error Characterization and Error Correction Approaches in Combinatorial DNA-based Storage, Sci Rep, 16, (2026) 8093.
- A. Kobovich, O. Leitersdorf, D. Bar-Lev, and E. Yaakobi, Universal Framework for Parametric Constrained Coding, IEEE Trans. Inform. Theory, 6 (2026), 3678-3692.
Peer-reviewed Conference Proceedings
- E. Yaakobi, T. Etzion, Error Correction of Multidimensional Bursts, Proc. IEEE Int’l Symp. on Information Theory, Nice, France (June 2009), 1178–1182.
- E. Yaakobi, A. Vardy, P.H. Siegel, J.K. Wolf, Multidimensional Flash Codes, textitProc. 46-th Annual Allerton Conference on Communication, Control and Computing, Monticello, IL, (September 2008).
- A. Jiang, R. Mateescu, E. Yaakobi, J. Bruck, P.H. Siegel, A. Vardy, J.K. Wolf, Storage Coding for Wear Leveling in Flash Memories, Proc. IEEE Int’l Symp. on Information Theory, Seoul, Korea (June 2009), 1234–1238.
- H. Mahdavifar, P.H. Siegel, A. Vardy, J.K. Wolf, E. Yaakobi, A Nearly Optimal Construction of Flash Codes, Proc. IEEE Int’l Symp. on Information Theory, Seoul, Korea (June 2009), 1239–1243.
- L. Grupp, A. Caulfield, J. Coburn, S. Swanson, E. Yaakobi, P.H. Siegel, J.K. Wolf, Characterizing Flash Memory: Anomalies, Observations, and Applications, Proc. of the 42nd Int’l Symp. on Microarchitecture (MICRO 09), New-York, New-York (December 2009), 24–33.
- E. Yaakobi, P.H. Siegel, A. Vardy, J.K. Wolf, Multiple Error-Correcting WOM-Codes, Proc. IEEE Int’l Symp. on Information Theory, Austin, Texas (June 2010), 1933–1937.
- E. Yaakobi, T. Etzion, High Dimensional Error-Correcting Codes, Proc. IEEE Int’l Symp. on Information Theory, Austin, Texas (June 2010), 1178–1182.
- E. Yaakobi, S. Kayser, P.H. Siegel, A. Vardy, J.K. Wolf, Efficient Two-Write WOM-Codes, Proc. IEEE Information Theory Workshop, Dublin, Ireland (August-September 2010).
- E. Yaakobi, A. Jiang, P.H. Siegel, A. Vardy, J.K. Wolf, On The Parallel Programming of Flash Memory Cells, Proc. IEEE Information Theory Workshop, Dublin, Ireland (August-September 2010).
- T. Etzion, A. Vardy, E. Yaakobi, Dense Error-Correcting Codes in the Lee Metric, Proc. IEEE Information Theory Workshop, Dublin, Ireland (August-September 2010).
- S. Kayser, E. Yaakobi, P.H. Siegel, A. Vardy, J.K. Wolf, Multiple-Write WOM-Codes, Proc. 48-th Annual Allerton Conference on Communication, Control and Computing, Monticello, Illinois (September 2010).
- E. Yaakobi, J. Ma, L. Grupp, P.H. Siegel, S. Swanson, J.K. Wolf, Error Characterization and Coding Schemes for Flash Memories, Proc. Workshop on the Application of Communication Theory to Emerging Memory Technologies, Miami, Florida (December 2010).
- E. Yaakobi, P.H. Siegel, A. Vardy, J.K. Wolf, On Codes that Correct Asymmetric Errors with Graded Magnitude Distribution, Proc. IEEE Int’l Symp. on Information Theory, St. Petersburg, Russia (July 2011), 1021–1025.
- R. Gabrys, E. Yaakobi, L. Dolecek, P.H. Siegel, A. Vardy, J.K. Wolf, Non-binary WOM-Codes for Multilevel Flash Memories, Proc. IEEE Information Theory Workshop, Paraty, Brazil (October 2011), 40–44.
- M. Qin, E. Yaakobi, P.H. Siegel, Time-Space Constrained Codes for Phase-Change Memories, Globecom Communications Conference, Houston, Texas (December 2011), 1–6.
- E. Yaakobi, L. Grupp, P.H. Siegel, S. Swanson, J.K.Wolf, Characterization and Error-Correcting Codes for TLC Flash Memories, Proc. Int’l Conference on Computing, Networking and Communications, Data Storage Technology and Applications Symposium, Maui, Hawaii (January-February 2012), 486–491.
- Y. Cassuto, E. Yaakobi, Short Q-ary WOM Codes with Hot/Cold Write Differentiation, Proc. IEEE Int’l Symp. on Information Theory, Cambridge, Massachusetts (July 2012), 1396–1400.
- R. Gabrys, E. Yaakobi, L. Grupp, S. Swanson, L. Dolecek, Tackling Intracell Variability in TLC Flash Through Tensor Product Codes, Proc. IEEE Int’l Symp. on Information Theory, Cambridge, Massachusetts (July 2012), 1005–1009.
- M. Qin, E. Yaakobi, P.H. Siegel, Optimized Cell Programming for Flash Memories with Quantizers, Proc. IEEE Int’l Symp. on Information Theory, Cambridge, Massachusetts (July 2012), 1000-1004.
- L. Wang, M. Qin, E. Yaakobi, Y.-H. Kim, P.H. Siegel, WOM with Retained Messages, Proc. IEEE Int’l Symp. on Information Theory, Cambridge, Massachusetts (July 2012), 1401–1405.
- E. Yaakobi, A. Shpilka, High Sum-Rate Three-Write and Non-Binary WOM Codes, Proc. IEEE Int’l Symp. on Information Theory, Cambridge, Massachusetts (July 2012), 1391–1395.
- E. Yaakobi, J. Bruck, On the Uncertainty of Information Retrieval in Associative Memories, Proc. IEEE Int’l Symp. on Information Theory, Cambridge, Massachusetts (July 2012), 106–110.
- E. Yaakobi, J. Bruck, P.H. Siegel, Decoding of Cyclic Codes over Symbol-Pair Read Channels, Proc. IEEE Int’l Symp. on Information Theory, Cambridge, Massachusetts (July 2012), 2901–2905.
- L. Xiang, B.M. Kurkoski, E. Yaakobi, WOM Codes Reduce Write Amplification in NAND Flash Memory, Proc. IEEE Globecom, Anaheim, California (December 2012), 3249–3254.
- S. Buzaglo, E. Yaakobi, J. Bruck, T. Etzion, Error-Correcting Codes for Multipermutations, Proc. IEEE Int’l Symp. on Information Theory, Istanbul, Turkey (July 2013), 724–728.
- Y. Cassuto, S. Kvatinsky, E. Yaakobi, Sneak-Path Constraints in Memristor Crossbar Arrays, Proc. IEEE Int’l Symp. on Information Theory, Istanbul, Turkey (July 2013), 156–160.
- E. En Gad, E. Yaakobi, A. Jiang,J. Bruck, Rank-Modulation Rewriting Codes for Flash Memories, Proc. IEEE Int’l Symp. on Information Theory, Istanbul, Turkey (July 2013), 704–708.
- T. Etzion, A. Vardy, E. Yaakobi, Coding for the Lee and Manhattan Metrics with Weighing Matrices, Proc. IEEE Int’l Symp. on Information Theory, Istanbul, Turkey (July 2013), 494–498.
- F. Farnoud (Hassanzadeh), E. Yaakobi, B. Touri, O. Milenkovic, J. Bruck, Building Consensus via Iterative Voting, Proc. IEEE Int’l Symp. on Information Theory, Istanbul, Turkey (July 2013), 1082–1086.
- R. Gabrys, E. Yaakobi, L. Dolecek, Correcting Grain-Errors in Magnetic Recording Media, Proc. IEEE Int’l Symp. on Information Theory, Istanbul, Turkey (July 2013), 689–693.
- E. Yaakobi, A. Jiang, J. Bruck, Akers Logic Array Memories, Proc. IEEE Int’l Symp. on Information Theory, Istanbul, Turkey (July 2013), 2369–2373.
- E. Yaakobi, M. Langberg, J. Bruck, Information-Theoretic Study of Voting Systems, Proc. IEEE Int’l Symp. on Information Theory, Istanbul, Turkey (July 2013), 1087–1091.
- E. Yaakobi, M. Schwartz, M. Langberg, J. Bruck, Sequence Reconstruction for Grassmann Graphs and Permutations, Proc. IEEE Int’l Symp. on Information Theory, Istanbul, Turkey (July 2013), 874–878.
- M. Blaum, J.S. Plank, M. Schwartz, E. Yaakobi, Construction of Partial MDS (PMDS) and Sector-Disk (SD) Codes with Two Global Parity Symbols, Proc. IEEE Int’l Symp. on Information Theory, Honolulu, Hawaii (June-July 2014), 1792–1796.
- S. Buzaglo, E. Yaakobi, Constrained Codes for Rank Modulation, Proc. IEEE Int’l Symp. on Information Theory, Honolulu, Hawaii (June-July 2014), 2396-2400.
- S. Buzaglo, E. Yaakobi, T. Etzion, J. Bruck, Systematic Codes for Rank Modulation, Proc. IEEE Int’l Symp. on Information Theory, Honolulu, Hawaii (June-July 2014), 2386–2390.
- A. Fazeli, A. Vardy, E. Yaakobi, Generalized Sphere Packing Bound: Basic Principles, Proc. IEEE Int’l Symp. on Information Theory, Honolulu, Hawaii (June-July 2014), 1256–1260.
- A. Fazeli, A. Vardy, E. Yaakobi, Generalized Sphere Packing Bound: Applications, Proc. IEEE Int’l Symp. on Information Theory, Honolulu, Hawaii (June-July 2014), 1261–1265.
- R. Gabrys, E. Yaakobi, F. Farnoud, J. Bruck, Codes Correcting Erasures and Deletions for Rank Modulation, Proc. IEEE Int’l Symp. on Information Theory, Honolulu, Hawaii (June-July 2014), 2759–2763.
- R. Gabrys, E. Yaakobi, F. Farnoud, F. Sala, J. Bruck, L. Dolecek, Single-Deletion-Correcting Codes over Permutations, Proc. IEEE Int’l Symp. on Information Theory, Honolulu, Hawaii (June-July 2014), 2764–2768.
- Y. Cassuto, S. Kvatinsky, E. Yaakobi, On the Channel Induced by Sneak-Path Errors in Memristor Arrays, Int’l Conference on Signal Processing and Communications (SPCOM), invited paper, India, (July 2014).
- F. Farnoud, E. Yaakobi, J. Bruck, Approximate Sorting of Data Streams with Limited Storage, Proc. 20-th Int’l Computing and Combinatorics Conference, Atlanta, Georgia (August 2014), 465–476.
- R. Motwani, E. Yaakobi, Construction of Random Input-Output Codes with Moderate Block Lengths, Proc. IEEE Information Theory Workshop, Hobart, Tasmania, Australia (November 2014), 602–606.
- A. Wachter-Zeh, E. Yaakobi, Codes for Partially Stuck-at Memory Cells, Proc. 10-th International ITG Conference on Systems, Communications and Coding, Hamburg, Germany, (February 2015).
- G. Yadgar, E. Yaakobi, A. Schuster, Write Once, Get 50% Free: Saving SSD Erase Costs Using WOM Codes, Usenix FAST, Santa Clara, CA, (February 2015).
- M. Horovitz, E. Yaakobi, WOM Codes with Uninformed Encoder, Proc. IEEE Information Theory Workshop, Jerusalem, Israel, (April-May 2015).
- P. Huang, E. Yaakobi, H. Uchikawa, P.H. Siegel, Cyclic Linear Binary Locally Repairable Codes, Proc. IEEE Information Theory Workshop, Jerusalem, Israel, (April-May 2015).
- A. Vardy, E. Yaakobi, Codes for RAID Solutions based upon SSDs, Proc. IEEE Information Theory Workshop, Jerusalem, Israel, (April-May 2015).
- A. Zeh, E. Yaakobi, Optimal Linear and Cyclic Locally Repairable Codes over Small Fields, Proc. IEEE Information Theory Workshop, Jerusalem, Israel, (April-May 2015).
- S. Buzaglo, P.H. Siegel, E. Yaakobi, Coding Schemes for Inter-Cell Interference in Flash Memory, Proc. IEEE Int’l Symp. on Information Theory, Hong Kong (June 2015), 1736–1740.
- A. Fazeli, A. Vardy, E. Yaakobi, Codes for Distributed PIR with Optimal Storage Overhead, Proc. IEEE Int’l Symp. on Information Theory, Hong Kong (June 2015), 2852–2856.
- P. Huang, E. Yaakobi, H. Uchikawa, P.H. Siegel, Linear Locally Repairable Codes with Availability, Proc. IEEE Int’l Symp. on Information Theory, Hong Kong (June 2015), 1871–1875.
- M. Langberg, M. Schwartz, E. Yaakobi, Coding for the l∞ Limited Permutation Channel, Proc. IEEE Int’l Symp. on Information Theory, Hong Kong (June 2015), 1936–1940.
- E. Yaakobi, A. Yucovich, G. Maor, G. Yadgar, When Do WOM Codes Improve the Erasure Factor in Flash Memories?, Proc. IEEE Int’l Symp. on Information Theory, Hong Kong (June 2015), 2091–2095.
- G. Yadgar, R. Shor, E. Yaakobi, A. Schuster, It’s Not Where Your Data Is, It’s How It Got There, HotStorage, Santa Clara, CA, (July 2015).
- A. Wachter-Zeh, E. Yaakobi, Masking Trapped Charge in Flash Memories, Proc. 48-th Annual Allerton Conference on Communication, Control and Computing, Monticello, IL, (Sep.-Oct. 2015).
- F. Margaglia, G. Yadgar, E. Yaakobi, Y. Li, A. Schuster, A. Brinkmann, The Devil Is in the Details: Implementing Flash Page Reuse with WOM Codes, Usenix FAST, Santa Clara, CA, (February 2016).
- S. Buzaglo, E. Yaakobi, Y. Cassuto, P.H. Siegel, Consecutive Switch Codes, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 660–664.
- Y. Cassuto, S. Kvatinsky, E. Yaakobi, Write Sneak-Path Constraints Avoiding Disturbs in Memristor Crossbar Arrays, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 950–954.
- R. Gabrys, E. Yaakobi, O. Milenkovic, Codes in the Damerau Distance for DNA Storage, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 1596–1600.
- R. Gabrys, E. Yaakobi, Sequence Reconstruction over the Deletion Channel, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 2644–2648.
- M. Horovitz, E. Yaakobi, On the Capacity of Non-Binary Write-Once Memory, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 945–949.
- P. Huang, P.H. Siegel, E. Yaakobi, Performance of Flash Memories with Different Binary Labelings: A Multi-User Perspective, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 955–959.
- N. Raviv, E. Yaakobi, M. Médard, Coding for Locality in Reconstructing Permutations, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 450–454.
- C. Schoeny, A. Wachter-Zeh, R. Gabrys, E. Yaakobi, Codes Correcting a Burst of Deletions or Insertions, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 630–634.
- A. Vardy, E. Yaakobi, Constructions of Batch Codes with Optimal Redundancy, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 1197–1201.
- A. Zeh, E. Yaakobi, Bounds and Constructions of Codes with Multiple Localities, Proc. IEEE Int'l Symp. on Information Theory, Barcelona, Spain (July 2016), 640–644.
- J. Aspnes, K. Censor-Hillel, E. Yaakobi , Concurrent Use of Write-Once Memory, SIROCCO, Helsinki, Finland, (July 2016 ), 127–142.
- H. Asi, E. Yaakobi, Nearly Optimal Constructions of PIR and Batch Codes, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 151–155.
- Y.-M. Chee, H.-M. Kiah, A. Vardy, V.-K. Vu, E. Yaakobi, Coding for Racetrack Memories, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 619–623.
- Y.-M. Chee, H.-M. Kiah, A. Vardy, E. Yaakobi, Explicit Constructions of Finite-Length WOM Codes, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 2870–2874.
- R. Gabrys, E. Yaakobi, M. Blaum, P.H. Siegel, Constructions of Partial MDS Codes over Small Fields, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 1–5.
- I. Haviv, M. Langberg, M. Schwartz, E. Yaakobi, Non-linear Cyclic Codes that Attain the Gilbert-Varshamov Bound, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 586–588.
- M. Horovitz, E. Yaakobi, Reconstruction of Sequences over Non-Identical Channels, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 1510–1514.
- M. Levy, E. Yaakobi, Mutually Uncorrelated Codes for DNA Storage, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 3125–3129.
- N. Raviv, M. Schwartz, E. Yaakobi, Rank Modulation Codes for DNA Storage, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 3135–3139.
- L. Yohananov, E. Yaakobi, Erasure Correcting Graph Codes, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 844–848.
- H. Zhang, E. Yaakobi, N. Zilberstein, Multiset Combinatorial Batch Codes, Proc. IEEE Int'l Symp. on Information Theory, Aachen, Germany (July 2017), 2188–2192.
- A. Lenz, A. Wachter-Zeh, E. Yaakobi, Bounds on Codes Correcting Tandem and Palindromic Duplications, Proc. the Tenth Int'l Workshop on Coding and Cryptography, Saint-Petersburg, Russia (September 2017).
- P. Huang, E. Yaakobi, and P.H. Siegel, Multi-Erasure Locally Recoverable Codes Over Small Fields, Proc. 55-th Annual Allerton Conference on Communication, Control and Computing, Monticello, IL, (October 2017), 1123–1130.
- L. Yohananov and E. Yaakobi, Codes for Erasures over Directed Graphs, Information Theory Workshop, Kaohsiung, Taiwan (November 2017), 116–120.
- P. Huang, E. Yaakobi, and P.H. Siegel, Ladder Codes: A Class of Error-Correcting Codes with Multi-Level Shared Redundancy, IEEE Int’l Conf. on Comm., Kansas City, Missouri (May 2018).
- R. Shor, G. Yadgar, W. Huang, E. Yaakobi, and J. Bruck, How to Share a Really Big Secret, 11th ACM International Systems and Storage Conference (SYSTOR 2018), Haifa, Israel, (June 2018), 76–88.
- Y.-M. Chee, H.-M. Kiah, A. Vardy, V.-K. Vu, and E. Yaakobi, Codes Correcting Limited-Shift Errors in Racetrack Memories, IEEE Int’l Symp. on Information Theory, Vail, Colorado (June 2018).
- O. Elishco, R. Gabrys, and E. Yaakobi, Bounds and Constructions of Codes over Symbol-Pair Read Channels, IEEE Int’l Symp. on Information Theory, Vail, Colorado (June 2018).
- A. Lenz, P.H. Siegel, A. Wachter-Zeh, and E. Yaakobi, Coding over Sets for DNA Storage, IEEE Int’l Symp. on Information Theory, Vail, Colorado (June 2018).
- E. Yaakobi, G. Yadgar, N. Bundak, and L. Gilon, A Case for Biased Programming in Flash, 10th USENIX Workshop on Hot Topics in Storage and File Systems (HotStorage), Boston, CA, (July 2018).
- Y.-M. Chee, M. Horovitz, A. Vardy, V.-K. Vu, and E. Yaakobi, Codes for Endurance-Limited Memories, IEEE Int’l Symp. on Information Theory and Its Applications, Singapore (October 2018).
- Y.-M. Chee, R. Gabrys, A. Vardy, V.-K. Vu, and E. Yaakobi, Exact Reconstruction from Deletions and Substitutions in Racetrack Memories, Information Theory Workshop, Guangzhou, China (November 2018).
- M. Abu-Sini and E. Yaakobi, Reconstruction of Sequences in DNA Storage, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 290–294.
- Y.-M. Chee, T. Etzion, H.-M. Kiah, V.-K. Vu, A. Vardy, and E. Yaakobi, Bounded De Bruijn Code and Its Applications, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 2369–2373.
- Y.-M. Chee, H.-M. Kiah, A.J.H. Vinck, V.-K. Vu, and E. Yaakobi, Coding for Write `-step-up Memories, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 1597–1601.
- Y.-M. Chee, H.-M. Kiah, E. Yaakobi, and H. Zhang, A Generalization of Blackburn-Etzion Construction for PIR Array Codes, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 1062–1066.
- O. Elishco, R. Gabrys, M. Médard, and E. Yaakobi, Repeat-Free Codes, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 932–936.
- T. Etzion, O.W. Gnilke, D. Karpuk, E. Yaakobi, and Y. Zhang, Private Proximity Retrieval, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 2119–2123.
- A. Lenz, P.H. Siegel, A. Wachter-Zeh, and E. Yaakobi, Correcting Substitution Errors in Indexed Sets, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 757–761.
- H.-Y. Lin, S. Kumar, E. Rosnes, A. Graell i Amat, and E. Yaakobi, Weak Private Information Retrieval, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 1257–1261.
- T. Shinkar, E. Yaakobi, A. Lenz, and A. Wachter-Zeh, Clustering-Correcting Codes, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 81–85.
- L. Yohananov, Y. Efron, and E. Yaakobi, Double and Triple Node-Erasure-Correcting Codes over Graphs, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 1582–1586.
- Y. Zhang, E. Yaakobi, and T. Etzion, Bounds on the Length of Functional PIR and Batch Codes, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 2129–2133.
- Y. Zhang, E. Yaakobi, T. Etzion, and M. Schwartz, On the Access Complexity of PIR Schemes, IEEE Int’l Symp. on Information Theory, Paris, France (July 2019), 2134–2138.
- Y.-M. Chee, M. Horovitz, V.-K. Vu„ E. Yaakobi, and A. Vardy, Endurance-Limited Memories with Informed Decoder, IEEE Information Theory Workshop, Frisby, Sweden (August 2019).
- M. Horovitz, E. Yaakobi, E. En Gad, and J. Bruck, Iterative Programming of Noisy Memory Cells, IEEE Information Theory Workshop, Frisby, Sweden (August 2019).
- A. Lenz, P.H. Siegel, A. Wachter-Zeh, and E. Yaakobi, An Upper Bound on the Capacity of the DNA Storage Channel, IEEE Information Theory Workshop, Frisby, Sweden (August 2019).
- J. Chrisnata, H.-M. Kiah, S. Rao, A. Vardy, E. Yaakobi, and H. Yao, On the Number of Distinct k-Decks: Enumeration and Bounds, Int’l Symp. on Communications and Information Technologies, Ho Chi Minh City, Vietnam (September 2019).
- R. Gabrys, H.-M. Kiah, A. Vardy, E. Yaakobi, and Y. Zhang, Locally Balanced Constraints, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 664–669.
- L. Holzbaur, S. Puchinger, E. Yaakobi, and A.Wachter-Zeh, Partial MDS Codes with Local Regeneration, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 628–635.
- H.-M. Kiah, T.-T. Nguyen, and E. Yaakobi, Coding for Sequence Reconstruction for Single Edits, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 676–681.
- A. Lenz, Y. Liu, C. Rashtchian, P.H. Siegel, A. Wachter-Zeh, and E. Yaakobi, Coding for Efficient DNA Synthesis, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 2903–2908.
- A. Lenz, C. Rashtchian, P.H. Siegel, and E. Yaakobi, Covering Codes for Insertions and Deletions, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 723–728.
- H.-Y. Lin, S. Kumar, E. Rosnes, A. Graell i Amat, and E. Yaakobi, The Capacity of Single-Server Weakly- Private Information Retrieval, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 1053–1058.
- S. Marcovich and E. Yaakobi, Reconstruction of Strings from their Substrings Spectrum, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 658–663.
- M. Nassar and E. Yaakobi, Array Codes for Functional PIR and Batch Codes, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 1024–1029.
- O. Sabary, E. Yaakobi, and A. Yucovich, The Error Probability of Maximum-Likelihood Decoding over Two Deletion/Insertion Channels, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 763–768.
- I. Smagloy, L. Welter, A. Wachter-Zeh, and E. Yaakobi, Single-Deletion Single-Substitution Correcting Codes, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 775–780.
- L. Yohananov and E. Yaakobi, Codes over Trees, IEEE Int’l Symp. on Information Theory, Los Angeles, California, (June 2020), 670–675.
- O. Sabary, A. Yucovich, G. Shapira, and E. Yaakobi, Reconstruction Algorithms for DNA-Storage Systems, 26th Int'l Conf. on DNA Computing and Molecular Programming, (September 2020).
- R. Bitar, I. Smagloy, L. Welter, A. Wachter-Zeh, and E. Yaakobi, Criss-Cross Deletion Correcting Codes, to appear Int’l Symp. on Information Theory and Its Applications, Kapolei, Hawai’i, (October 2020), 304–308.
- J. Chrisnata, H.-M. Kiah, and E. Yaakobi, Optimal Reconstruction Codes for Deletion Channels, to appear Int’l Symp. on Information Theory and Its Applications, Kapolei, Hawai’i, (October 2020) 279–283.
- R. Gabrys, P.H. Siegel, and E. Yaakobi, Segmented Reverse Concatenation: A New Approach to Constrained ECC, to appear Int’l Symp. on Information Theory and Its Applications, Kapolei, Hawai’i, (October 2020), 254–258.
- M. Abu-Sini and E. Yaakobi, On List Decoding of Insertions and Deletions under the Reconstruction Model, IEEE Int’l Symp. on Information Theory, Melbourne, Australia, (July 2021), 1707–1711.
- D. Bar-Lev, Y. Gershon, O. Sabary, and E. Yaakobi, Decoding for Optimal Expected Normalized Distance over the t-Deletion Channel, IEEE Int’l Symp. on Information Theory, Melbourne, Australia, (July 2021), 1847–1852.
- D. Bar-Lev, T. Etzion, and E. Yaakobi, On Levenshtein Balls with Radius One, IEEE Int’l Symp. on Information Theory, Melbourne, Australia, (July 2021), 1979–1984.
- Y.-M. Chee, A. Vardy, V.-K. Vu, and E. Yaakobi, Coding for Transverse-Reads in Domain Wall Memories, IEEE Int’l Symp. on Information Theory, Melbourne, Australia, (July 2021), 1924–1929.
- L. Holzbaur, S. Puchinger, E. Yaakobi, and A. Wachter-Zeh, Correctable Erasure Patterns in Product Topologies, IEEE Int’l Symp. on Information Theory, Melbourne, Australia, (July 2021), 2054–2059.
- A. Lenz, R. Bitar, A. Wachter-Zeh, E. Yaakobi, Function-Correcting Codes, IEEE Int’l Symp. on Information Theory, Melbourne, Australia, (July 2021), 1290–1295.
- S. Marcovich, T. Etzion, and E. Yaakobi, Balanced de Bruijn Sequences, IEEE Int’l Symp. on Information Theory, Melbourne, Australia, (July 2021), 1528–1533.
- L. Welter, R. Bitar, A. Wachter-Zeh, and E. Yaakobi, Multiple Criss-Cross Deletion-Correcting Codes, IEEE Int’l Symp. on Information Theory, Melbourne, Australia, (July 2021), 2798–2803.
- L. Yohananov, E. Yaakobi, Almost Optimal Construction of Functional Batch Codes Using Hadamard Codes, IEEE Int’l Symp. on Information Theory, Melbourne, Australia, (July 2021), 3139–3144.
- D. Bar-Lev, O. Sabary, Y. Gershon, and E. Yaakobi, The Intersection of Insertion and Deletion Balls, IEEE Information Theory Workshop, Kanazawa, Japan, (October 2021).
- R. Shafir, O. Sabary, L. Anavy, E. Yaakobi, and Z. Yakhini, Sequence Reconstruction Under Stutter Noise in Enzymatic DNA Synthesis, IEEE Information Theory Workshop, Kanazawa, Japan, (October 2021).
- Y. Yehezkeally, S. Marcovich, and E. Yaakobi, Multi-strand Reconstruction from Substrings, IEEE Information Theory Workshop, Kanazawa, Japan, (October 2021).
- A. Banerjee, A. Wachter-Zeh, and E. Yaakobi, Insertion and Deletion Correction in Polymer-Based Data Storage, IEEE Int'l Symp. on Information Theory, Aalto, Finland, (June-July 2022), 742–747.
- D. Bar-Lev, S. Marcovich, E. Yaakobi, and Y. Yehezkeally, Adversarial Torn-Paper Codes, IEEE Int'l Symp. on Information Theory, Aalto, Finland, (June-July 2022), 2947–2952.
- A. Barg, O. Elishco, R. Gabrys, and E. Yaakobi, Recoverable Systems on Lines and Grids, IEEE Int'l Symp. on Information Theory, Aalto, Finland, (June-July 2022), 2656–2661.
- J. Chrisnata, H.-M. Kiah, A. Vardy, and E. Yaakobi, Bee Identification for DNA Strands, IEEE Int'l Symp. on Information Theory, Aalto, Finland, (June-July 2022), 909–914.
- S. Marcovich, T. Etzion, and E. Yaakobi, Covering Sequences for $\ell$-Tuples, IEEE Int'l Symp.\ on Information Theory, Aalto, Finland, (June-July 2022), 43–48.
- N. Raviv, R. Bitar, and E. Yaakobi, Information Theoretic Private Inference in Quantized Models, IEEE Int'l Symp. on Information Theory, Aalto, Finland, (June-July 2022), 1689–1694.
- E. Stylianou, L. Welter, R. Bitar, A. Wachter-Zeh, and E. Yaakobi, Equivalence of Insertion/Deletion Correcting Codes for $d$-Dimensional Arrays, IEEE Int'l Symp.\on Information Theory, Aalto, Finland, (June-July 2022), 754–759.
- A. Kobovich, O. Leitersdorf, D. Bar-Lev, and E. Yaakobi, Codes for Constrained Periodicity, Int'l Symp. on Information Theory and Its Applications, Tsukuba, Japan (October 2022).
- Y. Yehezkeally, D. Bar-Lev, S. Marcovich, and E. Yaakobi, Reconstruction from Substrings with Partial Overlap, Int'l Symp. on Information Theory and Its Applications, Tsukuba, Japan (October 2022).
- S. Marcovich and E. Yaakobi, The Zero Cubes Free and Cubes Unique Multidimensional Constraints, IEEE Information Theory Workshop, Bumbai, India, (November 2022).
- S. Sighvi, O. Sabary, D. Bar-Lev, and E. Yaakobi, The Input and Output Entropies of the k-Deletion/Insertion Channel, IEEE Information Theory Workshop, Bumbai, India, (November 2022).
- M. Abu-Sini, A. Lenz, and E. Yaakobi, DNA Synthesis Using Shortmers, IEEE Int’l Symp. on Information Theory, Taipei, Taiwan, (June 2023), 585–590.
- A. Banerjee, Y. Yehezkeally, A. Wachter-Zeh, and E. Yaakobi, Error-Correcting Codes for Nanopore Sequencing, IEEE Int’l Symp. on Information Theory, Taipei, Taiwan, (June 2023), 364–369.
- D. Bar-Lev, A. Mizrahi, E. Yaakobi, O. Rottenstreich, and T. Etzion, Coding for IBLTs with Listing Guarantees, IEEE Int’l Symp. on Information Theory, Taipei, Taiwan, (June 2023), 1657–1662.
- D. Bar-Lev, O. Sabary, R. Gabrys, and E. Yaakobi, Cover Your Bases: How to Minimize the Sequencing Coverage in DNA Storage Systems, IEEE Int’l Symp. on Information Theory, Taipei, Taiwan, (June 2023), 370–375.
- A. Boruchovsky, D. Bar-Lev, and E. Yaakobi, DNA Correcting Codes: End-To-End Correction in DNA Storage Systems, IEEE Int’l Symp. on Information Theory, Taipei, Taiwan, (June 2023), 579–584.
- Y.-M. Chee, T. Etzion, K.A.S. Immink, T.-T. Nguyen, V.-K. Vu, J.H. Weber, and E. Yaakobi, Thermal-Aware Channel Capacity, IEEE Int’l Symp. on Information Theory, Taipei, Taiwan, (June 2023), 2661–2666.
- D. Hanania, D. Bar-Lev, Y. Nogin, Y. Shechtman, and E. Yaakobi, On the Capacity of DNA Labeling, IEEE Int’l Symp. on Information Theory, Taipei, Taiwan, (June 2023), 567-572.
- C. Hofmeister, L. Masny, E. Yaakobi, and R. Bitar, Trading Communication for Computation in Byzantine-Resilient Gradient Coding, IEEE Int’l Symp. on Information Theory, Taipei, Taiwan, (June 2023), 1985–1990.
- S. Singhvi, A. Boruchovsky, H.-M. Kiah, and E. Yaakobi, Data-Driven Bee Identification for DNA Strands, IEEE Int’l Symp. on Information Theory, Taipei, Taiwan, (June 2023), 797–802.
- A. Mizrahi, D. Bar-Lev, E. Yaakobi, and O. Rottenstreich, Invertible Bloom Lookup Tables with Listing Guarantees, to appear ACM Sigmetrics/IFIP Performance, Venice, Italy, (June 2024).
- A. Kobovich, E. Yaakobi, and N. Weinberger, M-DAB: An Input-Distribution Optimization Algorithm for Composite DNA Storage by the Multinomial Channel, to appear 2024 International Zurich Seminar on Information and Communication, Zurich, Switzerland, (March 2024).
- H. Abraham, R. Gabrys, and E. Yaakobi, Covering All Bases: The Next Inning in DNA Sequencing Efficiency, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 464–469.
- A. Banerjee, Y. Yehezkeally, A. Wachter-Zeh, and E. Yaakobi, Correcting a Single Deletion in Reads from a Nanopore Sequence, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 103–108.
- D. Bar-Lev, T. Etzion, E. Yaakobi, and Z. Yakhini, Representing Information on DNA using Patterns Induced by Enzymatic Labeling, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 1943–1948.
- D. Bar-Lev, A. Kobovich, O. Leitersdorf, and E. Yaakobi, Optimal Almost-Balanced Sequences, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 2628–2633.
- A. Boruchovsky, E. Yaakobi, and T. Etzion, Pair-Covering Codes, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 687–692.
- Y.-M. Chee, T. Etzion, K.A.S. Immink, T.-T. Nguyen, V.-K. Vu, J.H. Weber, and E. Yaakobi, Thermal-Aware Channel with Multiple Wires, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 1035–1040.
- K.-H. Chen, D.-T. Dao, H.-M. Kiah, V.L.P. Pham and E. Yaakobi, Noise-Tolerant Codebooks for Semi-Quantitative Group Testing: Application to Spatial Genomics, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 3023–3028.
- T. Cohen and E. Yaakobi, Optimizing the Decoding Probability and Coverage Ratio of Composite DNA, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 1949–1954.
- R. Con, R. Gabrys, and E. Yaakobi, One Code Fits All: Strong Stuck-at Codes for Versatile Memory Encoding, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 2634–2639.
- A. Gruica, D. Bar-Lev, A. Ravagnani, and E. Yaakobi A Combinatorial Perspective on Random Access Efficiency for DNA Storage, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 675–680.
- C. Hofmeister, A. Gruica, D. Hanania, R. Bitar, and E. Yaakobi, Achieving DNA Labeling Capacity with Minimum Labels through Extremal de Bruijn Subgraphs IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 452–457.
- S. Jain, L. Masny, C. Hofmeister, E. Yaakobi, and R. Bitar, Interactive Byzantine-Resilient Gradient Coding for General Data Assignments, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 3273–3278.
- A. Kobovich, O. Leitersdorf, D. Bar-Lev, and E. Yaakobi, Universal Framework for Parametric Constrained Coding, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 1023–1028.
- S. Kruglik, H.-M. Kiah, S.-H. Dau, and E. Yaakobi, Private Repair of a Single Erasure in Reed Solomon Codes, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 2640–2645.
- O. Sabary, I. Preuss, R. Gabrys, Z. Yakhini, L. Anavy, and E. Yaakobi, Error-Correcting Codes for Combinatorial DNA Composite, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 109–114.
- S. Singhvi, R. Con, H.-M. Kiah, and E. Yaakobi, An Optimal Sequence Reconstruction Algorithm for Reed-Solomon Codes, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 2832–2837.
- F. Walter, O. Sabary, A. Wachter-Zeh, and E. Yaakobi, Coding for Composite DNA to Correct Substitutions, Strand Losses, and Deletions, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 97–102.
- O. Yerushalmi, T. Etzion, and E. Yaakobi, The Capacity of the Weighted Read Channel, IEEE Int’l Symp. on Information Theory, Athens, Greece, (July 2024), 115–120.
- Z. Lu, H.-M. Kiah, Y. Zhang, R.N. Grass, and E. Yaakobi, Coding for Synthesis Defects, IEEE Information Theory Workshop, Shenzhen, China, (November 2024), 621–626.
- C. Wang, E. Yaakobi, and Y. Zhang, How to Find Simple Conditions for Successful Sequence Reconstruction?, IEEE Information Theory Workshop, Shenzhen, China, (November 2024), 627–632.
- A. Zrihan, E. Yaakobi, and Z. Yakhini, Studying the Cycle Complexity of DNA Synthesis, IEEE Information Theory Workshop, Shenzhen, China, (November 2024), 633–638.
- T. Keniagin, E. Yaakobi, and O. Rottenstreich, Invertible Bloom Lookup Tables with Listing Guarantees, ACM Sigmetrics, Stoney Brook, New York, USA, (June 2025).
- A. Banerjee, R. Con, A. Wachter-Zeh, and E. Yaakobi, Decoding Insertions/Deletions via List Recovery, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- A. Banerjee, Y. Yehezkeally, A. Wachter-Zeh, and E. Yaakobi, Correcting Multiple Substitutions in Nanopore-Sequencing Reads, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- J. Bariffi, A.Wachter-Zeh, and E. Yaakobi, Sequence Reconstruction Over Coloring Channels for Protein Identification, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- P. Beelen, R. Con, A. Gruica, M. Montanucci, and E. Yaakobi, Reed-Solomon Codes Against Insertions and Deletions: Full-Length and Rate-1/2 Codes, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- M. Bertuzzo, A. Ravagnani, and E. Yaakobi, The Coverage Depth Problem in DNA Storage Over Small Alphabets, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- R. Con, R. Gabrys, and E. Yaakobi, QBEL: Quantum Burst Error Locating Codes, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- B. Dollma, O. Elishco, and E. Yaakobi, Coding for Ordered Composite DNA Sequences, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- A. Di Giusto, S. Bitzer, A. Ravagnani, and E. Yaakobi, Bounds and Codes for General Phased Burst Errors, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- R. Gross, R. Con, and E. Yaakobi, Improved Constructions of Linear Codes for Insertions and Deletions, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- D. Hanania, and E. Yaakobi, Error-Correcting Codes for Labeled DNA Sequences, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- A. Kobovich, E. Yaakobi, and N. Weinberger, DeepDIVE: Optimizing Input-Constrained Distributions for Composite DNA Storage via Multinomial Channel, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
- B. Moav, E. Yaakobi, and R. Gabrys, Complex DNA Synthesis Sequences, IEEE Int’l Symp. on Information Theory, Ann Arbor, Michigan, USA (June 2025).
Patents
- E. Yaakobi, S. Kayser, P.H. Siegel, A. Vardy, J.K. Wolf, “Efficient Two Write WOM Codes, Coding Methods and Devices,” Patent No. US 2013/0080681 A1 (March 2013).
- E. Yaakobi, P.H. Siegel, A. Vardy, J.K. Wolf, “Strong Single and Multiple Error Correcting WOM Codes, Coding Methods and Devices,” Patent No. US 2013/0091402 A1 (April 2013).
- A. Jiang, E. En Gad, J. Bruck, E. Yaakobi, “Rank-Modulation Rewriting Codes for Flash Memories,” Patent No. US 2013/0254466 A1 (Spetember 2013).
- A. Schuster, E. Yaakobi, G. Yadgar, “Reusable memory devices with WOM codes,” Patent No. WO2016116930 A1 (July 2016).
- O. Sabary, A. Yucovich, G. Shapira, E. Yaakobi, “Reconstruction Algorithms for DNA-Storage Systems,” Patent No. US 17/447006
Selected Invited Talks
* “Codes for Write-Once Memories,” Information Theory and Applications Workshop, University of California, San Diego, La Jolla, CA, February 2011.
* “Error-Correcting Codes for Flash Memories,” University of California, Los Angeles, Los Angeles, CA, April 2011.
* “Error-Correcting Codes for Write-Once and Flash Memories,” Aspects of Coding Theory Workshop, EPFL, Lausanne, Switzerland, July 2011.
* “Coding for Non-Volatile Memories,” Data Storage Institute, Singapore, July 2011.
* “Recent Advances in Coding for Flash Memories,” Workshop on Coding for Flash Memories, University of Electro-Communications, Tokyo, Japan, March 2012.
* “On the Uncertainty of Information Retrieval in Associative Memories,” University of Illinois Urbana-Champaign, IL, May 2012.
* “An Information-Theoretic Study of the Structure of Large Voting Systems,” Workshop on Social Choice: Theory and Practice, NIPS 2012, Lake Tahoe, CA, December 2012
* "Generalized Sphere Packing Bound,” Tel Aviv University, Israel, December 2014.
* “Coding for Emerging Non-Volatile Memories,” Technion, Israel, December 2014.
* “Codes for Partially Stuck-at Memory Cells,” Information Theory and Applications Workshop, University of California, San Diego, La Jolla, CA, February 2015.
* “Write-Once Memory Codes,” Mainz University, Mainz, Germany, May 2015.
* “PIR with Low Storage Overhead: Coding instead of Replication,” Tel Aviv University, Israel, May 2015.
* “When Do WOM Codes Improve the Erasure Factor in Flash Memories?,” IBM, Israel, June 2015.
* “PIR with Low Storage Overhead: Coding instead of Replication,” Technion, Israel, May 2015.
* “PIR with Low Storage Overhead: Coding instead of Replication,” 53rd Annual Allerton Conference on Communication, Control and Computing, Monticello, Illinois, September 2015.
* “Coding for the ℓ∞-limited Permutation Channel,” University of California, San Diego, La Jolla, CA, October 2015.
* “Codes in the Damerau Distance for DNA Storage,” Information Theory and Applications Workshop, University of California, San Diego, La Jolla, CA, February 2016.
* “Codes in the Damerau Distance for DNA Storage,” California Institute of Technology, Pasadena, CA, February 2016.
* “When Do WOM Codes Improve the Erasure Factor in Flash Memories?," SanDisk, Israel, April 2016.
* “Write-Once Memory Codes,” Nanyang Technological University, Singapore, April 2016.
* “Codes in the Damerau Distance for DNA Storage,” University of California, San Diego, La Jolla, CA, October 2016.
* “Nearly Optimal Constructions of PIR and Batch Codes,” Information Theory and Applications Workshop, University of California, San Diego, La Jolla, CA, February 2017.
* “Tutorial on Private Information Retrieval (PIR): Coding Aspects," Workshop on Information theory and coding theory with applications to data security and privacy, Stockholm, Sweden, May, 2017.
* “Mutually Uncorrelated Codes for DNA Storage," Munich Workshop on Coding and Applications, Munich, Germany, July, 2017.
* “Coding over Sets for DNA Storage,” Information Theory and Applications Workshop, University of California, San Diego, La Jolla, CA, February 2018.
* “On the Access Complexity of PIR Schemes," Munich Workshop on Coding and Cryptography, Munich, Germany, April, 2018.
* Keynote speaker, “Coding for Private Information Retrieval," Workshop on Coding, Cooperation, and Security in Modern Communication Networks, Technion, 2018.
* “Private Information Retrieval," Dagstuhl Seminar on Algebraic Coding Theory for Networks, Storage, and Security, Germany, 2018.
* “Tutorial on Private Information Retrieval (PIR): Coding Aspects," International Symposium on Information Theory, Paris, France, July, 2019.
* “Coding for DNA Storage," Alcoma, March, 2020.
* Keynote speaker, “Coding for DNA Storage," International Symposium on Topics in Coding (ISTC 2020), Quebec, Canada, September, 2020.
* Invited talk at the 2022 Storage Technology workshop, November 2022.
* Invited talk at the first International Workshop on Biological Eympo Storage Technology, December 2022.
* Invited talk at the 2023 Coding and Information Theory Conference, February, 2022.
* ISIT Tutorial “Coding and Algorithms for DNA Storage Systems", June 2023.
* Invited talk at the Application-driven coding theory workshop at the Simons Institute, “Cover Your Bases: How To Minimize The Sequencing Coverage In DNA Storage Systems", March 2024.
Selected Publications | Journal Papers | Peer-reviewed Conference Proceedings | Patents | Selected Invited Talks
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